The "publish-or-perish culture" that dominates science today has
pushed the field in an undesirable direction. But despite the fact that much of
the science we see published today is inconsistently reproducible, this is
not all entirely due to the "publish-or-perish" culture, nor maleficent
cherry-picking motivated by self-gain. The truth behind the current situation
is much more benign, although equally worrisome and harmful.
The first explanation simply lies in the imperfection of science. An article on Scientific American
reveals that even the scientists we consider greatest had experiments that led
to irreproducibility upon others’ attempts to repeat it. Rather than stigmatize
irreproducibility and experiments that didn’t “work,” it would be more
beneficial to open up discussion and generate a space where it is possible to
talk about this issue and resolve it, as is being done in PubPeer.
By making discussion about the more fallible aspects of science open,
researchers wouldn't feel pressured to only report experiments that “worked”
and hide those that didn’t. Consequently, experiments that had
statistically insignificant or unexpected results could serve as advice or inspiration
for future research.
The effects of the stigma against insignificant results and
irreproducibility are compounded by human nature. More insidious and difficult
to detect are our conflicts of interest and tendencies for dishonesty. While it
is easier to detect conflicts of interest in others, as Dan Ariely posits,
it is incredibly difficult to detect it in ourselves. Sometimes we simply think we are
furthering science by eliminating outliers that are hiding the
significance of our results which we believe to be correct. It is difficult but
necessary to take a step back and realize that it not for the benefit of
science for us to do so, but for our own.
The situation is exacerbated by the media. By reporting medical “breakthroughs”
and “miracles” in studies that sometimes weren’t even done in humans, science
is portrayed as a lot more all-powerful than it actually is. This adds to the
atmosphere of pressure for researchers to meet that same misleading bar.
Bias in science needs to be dealt with from square one. Rather than allow
ourselves to fall prey to the pressures of the scientific community to publish
and our own well-meaning intentions to illustrate hypotheses we believe should be
true, we need to accept that sometimes science isn’t infallible, breakthroughs don’t
happen as often as the media reports, and experiments that don’t yield
significant results aren’t failures.
Showing posts with label #reproducibilitycrisis?. Show all posts
Showing posts with label #reproducibilitycrisis?. Show all posts
Tuesday, January 17, 2017
Little Cheaters
Dan Ariely in his talk, ‘The Honest Truth About Dishonesty’
at The Amaz!ng Meeting 2013 introduces the concept of little cheaters, that is,
people who are dishonest in ways that they consider small enough to maintain personal
morality while still reaping benefits of dishonesty. This concept was derived
from studies in the general population suggesting that scientists too are privy
to such behavior, but what implications does this have for science?
The most likely effect of dishonesty in science is irreproducibility.
If experiments are planned, executed, interpreted, or reported with even the
slightest amount of dishonesty, they are impossible to repeat by others. Consequences
extend beyond those who seek to replicate to those attempt to build on the
existing work as they would be working off likely incorrect information. Such deception
is clearly undesirable but eliminating it can be difficult as perpetrators may
not always be aware of their deception because they perform it while convinced of
their morality. This is further compounded by the inherent conflict of interest
that exists in all scientists. Every researcher holds stake in the success of
their work: graduate students benefit from publishing papers and graduating
early, senior investigators gain career advancement and increase their marketability
for grant funding by presenting positive results. All these factors color the
objectivity of researchers making it harder to recognize the subtle ways in
which they can be dishonest such as inflating the meaning of their findings or omitting
unfavorable results. Proper statistics should be able to check this bias but it
is no secret that many laboratory scientists are not sufficiently conversant in
statistical methods.
What then, does the combination of dishonesty, bias, and
poor statistical knowledge mean science is doomed? Should presenting work be
put off until these problems are eliminated? No. Rather, science needs to be
redefined as the work in progress that it is and not the subject of irrefutable
answers as perceived by many. Efforts should be taken certainly, to minimize blatant
falsehood in published work, but it should also be acceptable to not be quite
certain. Scientists will be more likely to shed their little cheater identity
when it is fine to have work that does not completely make sense.
Monday, January 16, 2017
Why you always lying?
Do scientists lie? Yes everyone lies. Why do scientists lie?
We, like our genes, are selfish. Does it matter that scientists lie?
If we can trust Dan Ariely’s talks, then his research
demonstrates that people in general lie and cheat marginally (and often) without feeling like they are dishonest or bad. Fair enough. We can all think
of times, or at least I certainly can (‘No officer I don’t know how fast I was
going’; ‘Yes gas station attendant I am over 21’), we have lied for minor
personal gains.
Apparently situations where there is a conflict of interest,
a distance between the lie and direct monetary outcome, and people you identify
with are also lying lead to more misbehavior. The first two parameters are met by
scientists. It is obviously in the interest of a scientist to perform research
with interesting results that gets published, and although publishing is
connected to monetary gain it isn’t a direct transaction. But many would argue
that the third parameter, other scientists lying about their data, is not something
that happens. Perhaps not so blatantly. Ariely goes on to discuss asking golfers
if they have picked up a golf ball and moved it. No. Kicked it while looking
the other direction? Of course. For scientists there is a distinct possibility
for a similar scenario. Have you ever falsified data? No, that is repugnant. Have
you ever used statistics you didn’t fully understand to analyze your data and
make them look good? ......
The kicker is that dishonesty in science is neither new nor
always problematic. Jared Horvath describes how important scientists from
Galileo to Millikan produced research that is not replicable yet helped to
push our collective understanding forward. Still it could be argued that
falsification is occurring at a greater rate in contemporary science. In “Trouble at the Lab” John Ioannidis is described as saying that
the majority of published findings are false. The author further notes that
very few articles are retracted.
So is the process of science failing in our new age? No. A
scientific paper should not be expected to be 100% correct. Hell one of the
main lessons being beat into our bones as grad students is that we should always
be ferociously looking for errors while reading papers. Just because a paper has
mistakes does not mean that it contains no useful information. The presence of
useful information implies the paper shouldn’t be retracted. Yes this means
that to obtain useful information from a paper you need more than a lay understanding
of the field, but the entire point is that we perform research on the cusp of
our society’s understanding. The health of the scientific enterprise should not be measured by how many mistakes there are in published articles, but by how much progress we are making toward improving our society.
Honest Science
We like to assume that the
scientific literature always reflects the truth. However, there is a growing
recognition that scientific findings are not guaranteed to be reproducible,
causing many to question the validity of published results. This has led to
dismay, exemplified in a 2016 Nature
poll reporting that, of the 1,576 researchers who participated, 52% agreed that
there is a ‘significant crisis’ of reproducibility in scientific research.
Irreproducible research is a valid concern, since making scientific progress would
seem to be difficult without the ability to corroborate results.
Some scientists argue, however, that
this lack of reproducibility in science is nothing new. As discussed in an
article by Dr. John Horvath in Scientific
American from 2013, unreliable research has been common since the beginning
of modern science, and indeed is necessary for scientists to push the
boundaries of what we know. Experiments that do not go as expected or
hypotheses that are eventually proved to be incorrect are often what lead to novel
discoveries. This is not a popular idea though, because it could potentially cause
the public and funding agencies that may not understand the true pace of
science to lose trust in the effectiveness of scientific research.
Regardless of whether or not scientific
findings are more or less reproducible now than in the past, the conclusion
from this discussion is the same: we need to ensure that we prioritize being upfront
and honest about experimental results. It is easy to allow personal opinions
and biases affect the way results are portrayed in scientific literature and to
the public. This human tendency to present results in the best light possible
is amplified by the growing pressure to publish and the intense competition for
funding and jobs. Everyone involved in the scientific process, from graduate
students to PIs to journal editors need to be encouraged to make truth and
honesty a priority in the way research is conducted and portrayed.
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